Bioinformatics/Subsequence: Difference between revisions
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(julia example) |
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println("Search sequence:\n$rand_string\nfor substring $subseq. Found at positions: ") |
println("Search sequence:\n$rand_string\nfor substring $subseq. Found at positions: ") |
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foreach(p -> print(rpad(p[2], 8), p[1] % 10 == 0 ? "\n" : ""), DNAsearch(subseq, rand_string)) |
foreach(p -> print(rpad(p[2], 8), p[1] % 10 == 0 ? "\n" : ""), enumerate(DNAsearch(subseq, rand_string))) |
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</lang>{{out}} |
</lang>{{out}} |
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<pre> |
<pre> |
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Search sequence: |
Search sequence: |
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CCGAAGCCAGGAGGACTGAGCGCTTGCGTCCCGAGTTCTGCGACGAGTCTCTTCATTATAAGGCCACTGATTGCGCTCATCATGAGTGCCAGAAGCACCGCTAAACATAAGTGTCCTTTCTTCCTGACGCACTTGAAGATTGTGACCATTTGTGCGGGTTGTGAGTTAGGGGCTCTCATTGTACACGATCTATAGTGTGC |
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AAGAGTACGTCGCCAGGGAAGCTTCGGAACGTGCCCGGTGCCAAGCGTCACTACGTGGCAGAGTATATTCATGCTGCAAGGAAATTATTAATCGGGTACTGTGCGCAGCTTGTGCCGCGATATTTTGTACTCTCTCGGAATAGGCAACGCTGGATCATGCGTAGACTGTTGATCGGACGAGTTTGTTACGGATAATAAGG |
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for substring |
for substring CGCT. Found at positions: |
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21:24 74:77 99:102 |
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</pre> |
</pre> |
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=={{header|Phix}}== |
=={{header|Phix}}== |
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