FASTA format: Difference between revisions
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m (→{{header|Phix}}: added syntax colouring the hard way) |
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=={{header|Phix}}== |
=={{header|Phix}}== |
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<lang Phix> |
<!--<lang Phix>(notonline)--> |
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<span style="color: #004080;">bool</span> <span style="color: #000000;">first</span> <span style="color: #0000FF;">=</span> <span style="color: #004600;">true</span> |
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integer fn = open("fasta.txt","r") |
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<span style="color: #004080;">integer</span> <span style="color: #000000;">fn</span> <span style="color: #0000FF;">=</span> <span style="color: #7060A8;">open</span><span style="color: #0000FF;">(</span><span style="color: #008000;">"fasta.txt"</span><span style="color: #0000FF;">,</span><span style="color: #008000;">"r"</span><span style="color: #0000FF;">)</span> |
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if fn=-1 then ?9/0 end if |
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<span style="color: #008080;">if</span> <span style="color: #000000;">fn</span><span style="color: #0000FF;">=-</span><span style="color: #000000;">1</span> <span style="color: #008080;">then</span> <span style="color: #0000FF;">?</span><span style="color: #000000;">9</span><span style="color: #0000FF;">/</span><span style="color: #000000;">0</span> <span style="color: #008080;">end</span> <span style="color: #008080;">if</span> |
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while true do |
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<span style="color: #008080;">while</span> <span style="color: #004600;">true</span> <span style="color: #008080;">do</span> |
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object line = trim(gets(fn)) |
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<span style="color: #004080;">object</span> <span style="color: #000000;">line</span> <span style="color: #0000FF;">=</span> <span style="color: #7060A8;">trim</span><span style="color: #0000FF;">(</span><span style="color: #7060A8;">gets</span><span style="color: #0000FF;">(</span><span style="color: #000000;">fn</span><span style="color: #0000FF;">))</span> |
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if atom(line) then puts(1,"\n") exit end if |
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<span style="color: #008080;">if</span> <span style="color: #004080;">atom</span><span style="color: #0000FF;">(</span><span style="color: #000000;">line</span><span style="color: #0000FF;">)</span> <span style="color: #008080;">then</span> <span style="color: #7060A8;">puts</span><span style="color: #0000FF;">(</span><span style="color: #000000;">1</span><span style="color: #0000FF;">,</span><span style="color: #008000;">"\n"</span><span style="color: #0000FF;">)</span> <span style="color: #008080;">exit</span> <span style="color: #008080;">end</span> <span style="color: #008080;">if</span> |
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if length(line) then |
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<span style="color: #008080;">if</span> <span style="color: #7060A8;">length</span><span style="color: #0000FF;">(</span><span style="color: #000000;">line</span><span style="color: #0000FF;">)</span> <span style="color: #008080;">then</span> |
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if line[1]=='>' then |
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<span style="color: #008080;">if</span> <span style="color: #000000;">line</span><span style="color: #0000FF;">[</span><span style="color: #000000;">1</span><span style="color: #0000FF;">]==</span><span style="color: #008000;">'>'</span> <span style="color: #008080;">then</span> |
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if not first then puts(1,"\n") end if |
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<span style="color: #008080;">if</span> <span style="color: #008080;">not</span> <span style="color: #000000;">first</span> <span style="color: #008080;">then</span> <span style="color: #7060A8;">puts</span><span style="color: #0000FF;">(</span><span style="color: #000000;">1</span><span style="color: #0000FF;">,</span><span style="color: #008000;">"\n"</span><span style="color: #0000FF;">)</span> <span style="color: #008080;">end</span> <span style="color: #008080;">if</span> |
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printf(1,"%s: ",{line[2..$]}) |
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<span style="color: #7060A8;">printf</span><span style="color: #0000FF;">(</span><span style="color: #000000;">1</span><span style="color: #0000FF;">,</span><span style="color: #008000;">"%s: "</span><span style="color: #0000FF;">,{</span><span style="color: #000000;">line</span><span style="color: #0000FF;">[</span><span style="color: #000000;">2</span><span style="color: #0000FF;">..$]})</span> |
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first = false |
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<span style="color: #000000;">first</span> <span style="color: #0000FF;">=</span> <span style="color: #004600;">false</span> |
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elsif first then |
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<span style="color: #008080;">elsif</span> <span style="color: #000000;">first</span> <span style="color: #008080;">then</span> |
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printf(1,"Error : File does not begin with '>'\n") |
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<span style="color: #7060A8;">printf</span><span style="color: #0000FF;">(</span><span style="color: #000000;">1</span><span style="color: #0000FF;">,</span><span style="color: #008000;">"Error : File does not begin with '>'\n"</span><span style="color: #0000FF;">)</span> |
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exit |
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<span style="color: #008080;">exit</span> |
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elsif not find_any(" \t",line) then |
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<span style="color: #008080;">elsif</span> <span style="color: #008080;">not</span> <span style="color: #7060A8;">find_any</span><span style="color: #0000FF;">(</span><span style="color: #008000;">" \t"</span><span style="color: #0000FF;">,</span><span style="color: #000000;">line</span><span style="color: #0000FF;">)</span> <span style="color: #008080;">then</span> |
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puts(1,line) |
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<span style="color: #7060A8;">puts</span><span style="color: #0000FF;">(</span><span style="color: #000000;">1</span><span style="color: #0000FF;">,</span><span style="color: #000000;">line</span><span style="color: #0000FF;">)</span> |
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else |
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<span style="color: #008080;">else</span> |
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printf(1,"\nError : Sequence contains space(s)\n") |
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<span style="color: #7060A8;">printf</span><span style="color: #0000FF;">(</span><span style="color: #000000;">1</span><span style="color: #0000FF;">,</span><span style="color: #008000;">"\nError : Sequence contains space(s)\n"</span><span style="color: #0000FF;">)</span> |
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exit |
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<span style="color: #008080;">exit</span> |
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end if |
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<span style="color: #008080;">end</span> <span style="color: #008080;">if</span> |
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end if |
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<span style="color: #008080;">end</span> <span style="color: #008080;">if</span> |
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end while |
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<span style="color: #008080;">end</span> <span style="color: #008080;">while</span> |
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close(fn)</lang> |
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<span style="color: #7060A8;">close</span><span style="color: #0000FF;">(</span><span style="color: #000000;">fn</span><span style="color: #0000FF;">)</span> |
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<!--</lang>--> |
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{{out}} |
{{out}} |
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<pre> |
<pre> |