Bioinformatics/Sequence mutation: Difference between revisions
Content added Content deleted
(Changing the representation of a DNA sequence from a sequence of Base to a string, as requested. Updated procedures to work with a string rather than a sequence.) |
m (Replaced the ugly "ord(Base.other) - 1" by "MaxBaseVal".) |
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| Line 1,459: | Line 1,459: | ||
of mutSwap: |
of mutSwap: |
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let newBase = Base(rand( |
let newBase = Base(rand(MaxBaseVal)) |
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echo fmt"Changing base at position {idx + 1} from {dnaSeq[idx]} to {newBase}" |
echo fmt"Changing base at position {idx + 1} from {dnaSeq[idx]} to {newBase}" |
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dnaSeq[idx] = newBase.toChar |
dnaSeq[idx] = newBase.toChar |
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| Line 1,468: | Line 1,468: | ||
of mutInsert: |
of mutInsert: |
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let newBase = Base(rand( |
let newBase = Base(rand(MaxBaseVal)) |
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echo fmt"Inserting base {newBase} at position {idx + 1}" |
echo fmt"Inserting base {newBase} at position {idx + 1}" |
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dnaSeq.insert($newBase, idx) |
dnaSeq.insert($newBase, idx) |
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