Bioinformatics/Sequence mutation: Difference between revisions
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(julia example) |
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=={{header|Julia}}== |
=={{header|Julia}}== |
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<lang julia>dnabases = ['A', 'C', 'G', 'T'] |
<lang julia>dnabases = ['A', 'C', 'G', 'T'] |
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randpos(seq) = rand(1:length |
randpos(seq) = rand(1:length(seq) # 1 |
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mutateat(pos, seq) = (s = seq[:]; s[pos] = rand(dnabases); s) # 2-1 |
mutateat(pos, seq) = (s = seq[:]; s[pos] = rand(dnabases); s) # 2-1 |
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deleteat(pos, seq) = [seq[1:pos-1]; seq[pos+1:end]] # 2-2 |
deleteat(pos, seq) = [seq[1:pos-1]; seq[pos+1:end]] # 2-2 |
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function weightedrandomsitemutation(seq, weights=[1, 1, 1], verbose=true) |
function weightedrandomsitemutation(seq, weights=[1, 1, 1], verbose=true) |
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position = |
position = randpos(seq) |
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newseq = weightedmutation(seq, position, weights, verbose) |
newseq = weightedmutation(seq, position, weights, verbose) |
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verbose && println(" at position $position") |
verbose && println(" at position $position") |
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Total 502 |
Total 502 |
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</pre> |
</pre> |
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=={{header|Perl}}== |
=={{header|Perl}}== |
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