Bioinformatics/Global alignment: Difference between revisions
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=={{header|Phix}}==
<lang Phix>procedure printcounts(sequence ss)▼
▲procedure printcounts(sequence ss)
-- Given DNA sequence(s), report the sequence, length and base counts
for i=1 to length(ss) do
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procedure shortest_common_superstring(sequence ss)
-- Returns shortest common superstring of a vector of strings
ss = deduplicate(unique(ss
sequence shortestsuper = {join(ss,"")}
integer shortest = length(shortestsuper[1])
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{{out}}
<pre>
Nucleotide counts for :TAAGAA▼
Base counts: Other:0, A:4, C:0, G:1, T:1, total:6▼
Nucleotide counts for :GAAGTA
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Base counts: Other:0, A:3, C:0, G:2, T:1, total:6
▲Nucleotide counts for :TAAGAA
▲Base counts: Other:0, A:4, C:0, G:1, T:1, total:6
Nucleotide counts for :CATTAGGG
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